After introducing and clarifying some epidemiological terminology, we will introduce compartment models of SIR-type and explore the meaning of the reproduction number and how it is affected by different aspects of both the disease itself, vaccinations, and human behaviour, including non-pharmaceutical interventions like contact restrictions.
After briefly looking into some challenges arising from the interpretation of available data, in particular due to undetected infections, we will focus in particular on the problem of less than perfect compliance with public policies aimed at slowing the spread of an epidemic. Finally, we will combine the lessons learned and explain how transient changes in reported incidence figures arise naturally from the dynamics of the epidemic without necessarily being caused by the very policy changes they are attributed to.